Stem-loop eca-mir-495

Accession

MI0012908

Description

Equus caballus eca-mir-495 precursor miRNA

Literature search

1 open access papers mention eca-mir-495
(1 sentences)

Sequence

117814 reads, 126.0 reads per million, 167 experiments

uggucccugaaaaGAAGUUGCCCAUGUUAUUUUCGcuugauaugugacgAAACAAACAUGGUGCACUUCUUuuucgguauca
((((.((.((((((((((.(((((((((..((((((.........).)))))..))))))).)))))))))))).)).))))

Structure

    c  u          U  -       AU     - uug 
uggu cc gaaaaGAAGU GC CCAUGUU  UUUCG c   a
|||| || |||||||||| || |||||||  ||||| |   u
acua gg uuuUUCUUCA CG GGUACAA  AAAgc g   a
    u  c          -  U       AC     a ugu 

Annotation confidence High

Genome context

24: 43344716-43344797 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from eca-mir-495

Mature eca-miR-495-5p

• Accession: MIMAT0051458
• Description: Equus caballus eca-miR-495-5p mature miRNA
• Sequence: 14 - GAAGUUGCCCAUGUUAUUUUCG - 35
• Evidence: not_experimental

Mature eca-miR-495-3p

• Accession: MIMAT0013165
• Description: Equus caballus eca-miR-495-3p mature miRNA
• Sequence: 50 - AAACAAACAUGGUGCACUUCUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131