Stem-loop eca-mir-496

Accession

MI0012909

Description

Equus caballus eca-mir-496 precursor miRNA

Literature search

1 open access papers mention eca-mir-496
(1 sentences)

Sequence

1205 reads, 7.0 reads per million, 80 experiments

acccuagccagguacucgaauggaGGUUGUCCAUGGUGUGUUCAUUUuauuuaugaUGAGUAUUACAUGGCCAAUCUCcuuucaguacuaaauucuucuuggg
.(((.((...((((((.(((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))........)).)))

Structure

a   u  -----cca      c   u        U     GU         Uua 
 ccc ag        gguacu gaa ggaGGUUG CCAUG  GUGUUCAUU   u
 ||| ||        |||||| ||| |||||||| |||||  |||||||||    
 ggg uc        ucauga cuu cCUCUAAC GGUAC  UAUGAGUag   u
-   u  uucuuaaa      -   u        C     AU         uau 

Annotation confidence High

Genome context

24: 43369622-43369724 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from eca-mir-496

Mature eca-miR-496-5p

• Accession: MIMAT0051459
• Description: Equus caballus eca-miR-496-5p mature miRNA
• Sequence: 25 - GGUUGUCCAUGGUGUGUUCAUUU - 47
• Evidence: not_experimental

Mature eca-miR-496-3p

• Accession: MIMAT0013166
• Description: Equus caballus eca-miR-496-3p mature miRNA
• Sequence: 57 - UGAGUAUUACAUGGCCAAUCUC - 78
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131