Stem-loop eca-mir-539

Accession

MI0012910

Description

Equus caballus eca-mir-539 precursor miRNA

Sequence

23930 reads, 47.0 reads per million, 135 experiments

auacuugaGGAGAAAUUAUCCUUGCUGUGUucgcuuuauuugugaugaAUCAUACAAGGACAAUUUCUUUuugaguau
(((((((((((((((((.((((((.(((((((((.........).)))).)))))))))).)))))))))))))))))

Structure

                 A      C    -    - uuu 
auacuugaGGAGAAAUU UCCUUG UGUG Uucg c   a
||||||||||||||||| |||||| |||| |||| |   u
uaugaguuUUUCUUUAA AGGAAC AUAC Aagu g   u
                 C      -    U    a ugu 

Annotation confidence High

Genome context

24: 43355997-43356074 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from eca-mir-539

Mature eca-miR-539-5p

• Accession: MIMAT0013167
• Description: Equus caballus eca-miR-539-5p mature miRNA
• Sequence: 9 - GGAGAAAUUAUCCUUGCUGUGU - 30
• Evidence: not_experimental

Mature eca-miR-539-3p

• Accession: MIMAT0051460
• Description: Equus caballus eca-miR-539-3p mature miRNA
• Sequence: 49 - AUCAUACAAGGACAAUUUCUUU - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131