Stem-loop eca-mir-541

Accession

MI0012911

Description

Equus caballus eca-mir-541 precursor miRNA

Literature search

2 open access papers mention eca-mir-541
(57 sentences)

Sequence

5907 reads, 23.0 reads per million, 138 experiments

acgucagggAAAGGAUUCUGCUGUCGGUCCCACUccagaguucgcaaaaugggUGGUGGGCACAGAAUCCAGUCUcugcuugug
(((.((((((..((((((((.((((.(..((((.(((............)))))))).))))))))))))..))))))..))).

Structure

-   -u      AA        C    G UC    U   gaguu 
 acg  cagggA  GGAUUCUG UGUC G  CCAC cca     c
 |||  ||||||  |||||||| |||| |  |||| |||      
 ugu  gucUCU  CCUAAGAC ACGG U  GGUg ggu     g
g   uc      GA        -    G --    -   aaaac 

Annotation confidence High

Genome context

24: 43373346-43373429 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from eca-mir-541

Mature eca-miR-541-5p

• Accession: MIMAT0051461
• Description: Equus caballus eca-miR-541-5p mature miRNA
• Sequence: 10 - AAAGGAUUCUGCUGUCGGUCCCACU - 34
• Evidence: not_experimental

Mature eca-miR-541-3p

• Accession: MIMAT0013168
• Description: Equus caballus eca-miR-541-3p mature miRNA
• Sequence: 54 - UGGUGGGCACAGAAUCCAGUCU - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131