Stem-loop eca-mir-544-2

Accession

MI0012913

Description

Equus caballus eca-mir-544-2 precursor miRNA

Sequence

778 reads, 2.0 reads per million, 83 experiments

auuuucaucaccuagggaUCUUGUUAAAAGGCAGAUUCUgauucagggaccaagAUUCUGCAUUUUUAGCAAGUUCccaagugaugcuaa
.....((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..))))))....

Structure

auuuu      cua    U           -     U   gauuc 
     caucac   ggga CUUGUUAAAAG GCAGA UCU     a
     ||||||   |||| ||||||||||| ||||| |||     g
     guagug   ccCU GAACGAUUUUU CGUCU Aga     g
-aauc      -aa    U           A     U   accag 

Annotation confidence High

Genome context

24: 43357324-43357413 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from eca-mir-544-2

Mature eca-miR-544-2-5p

• Accession: MIMAT0051463
• Description: Equus caballus eca-miR-544-2-5p mature miRNA
• Sequence: 19 - UCUUGUUAAAAGGCAGAUUCU - 39
• Evidence: not_experimental

Mature eca-miR-544-2-3p

• Accession: MIMAT0013170
• Description: Equus caballus eca-miR-544-2-3p mature miRNA
• Sequence: 55 - AUUCUGCAUUUUUAGCAAGUUC - 76
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131