Stem-loop eca-mir-656

Accession

MI0012915

Description

Equus caballus eca-mir-656 precursor miRNA

Literature search

1 open access papers mention eca-mir-656
(1 sentences)

Sequence

50228 reads, 71.0 reads per million, 140 experiments

cugaaauAGGUUGCCUGUGAGGUGUUCAcuuucuauacgaugAAUAUUAUACAGUCAACCUCUuuccggaaucgaauc
..((((.((((((.(((((.((((((((...((.....)))))))))).))))).)))))).))))............

Structure

----------cu    u      C     A        cuu  u 
            gaaa AGGUUG CUGUG GGUGUUCA   uc a
            |||| |||||| ||||| ||||||||   || u
            cuuU UCCAAC GACAU UUAUAAgu   ag a
cuaagcuaaggc    C      U     A        ---  c 

Annotation confidence High

Genome context

24: 43375643-43375720 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from eca-mir-656

Mature eca-miR-656-5p

• Accession: MIMAT0051465
• Description: Equus caballus eca-miR-656-5p mature miRNA
• Sequence: 8 - AGGUUGCCUGUGAGGUGUUCA - 28
• Evidence: not_experimental

Mature eca-miR-656-3p

• Accession: MIMAT0013172
• Description: Equus caballus eca-miR-656-3p mature miRNA
• Sequence: 43 - AAUAUUAUACAGUCAACCUCU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131