Stem-loop eca-mir-758

Accession

MI0012916

Description

Equus caballus eca-mir-758 precursor miRNA

Sequence

26810 reads, 41.0 reads per million, 149 experiments

gccuggguacaugagAUGGUUGACCAGAGAGCACACGcuuuauuugugccgUUUGUGACCUGGUCCACUAACCcucaguaucuaa
...(((((((.((((.((((.((((((.(.(((.((((.........).))).)))..))))))).))))...))))))))))).

Structure

gcc       a    --A    U      A -A   C   - uuu 
   uggguac ugag   UGGU GACCAG G  GCA ACG c   a
   ||||||| ||||   |||| |||||| |  ||| ||| |   u
   aucuaug acuc   AUCA CUGGUC C  UGU Ugc g   u
--a       -    CCA    C      - AG   U   c ugu 

Annotation confidence High

Genome context

24: 43337229-43337313 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from eca-mir-758

Mature eca-miR-758-5p

• Accession: MIMAT0051466
• Description: Equus caballus eca-miR-758-5p mature miRNA
• Sequence: 16 - AUGGUUGACCAGAGAGCACACG - 37
• Evidence: not_experimental

Mature eca-miR-758-3p

• Accession: MIMAT0013173
• Description: Equus caballus eca-miR-758-3p mature miRNA
• Sequence: 52 - UUUGUGACCUGGUCCACUAACC - 73
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131