Stem-loop eca-mir-889

Accession

MI0012918

Description

Equus caballus eca-mir-889 precursor miRNA

Sequence

51830 reads, 91.0 reads per million, 137 experiments

gugcuuaaagAAUGGCUGUCUGUAGUAUGGUCuccauauucauggugaUUAAUAUCGGACAACCAUUGUUuuaguauc
(((((.(((.(((((.((((((..((.(((((.((((....)))).)))))))..)))))).))))).))).))))).

Structure

-     u   g     C      UA  A     u    a 
 gugcu aaa AAUGG UGUCUG  GU UGGUC ccau u
 ||||| ||| ||||| ||||||  || ||||| ||||  
 uauga uUU UUACC ACAGGC  UA AUUag ggua u
c     u   G     A      UA  -     u    c 

Annotation confidence High

Genome context

24: 43356572-43356649 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from eca-mir-889

Mature eca-miR-889-5p

• Accession: MIMAT0051468
• Description: Equus caballus eca-miR-889-5p mature miRNA
• Sequence: 11 - AAUGGCUGUCUGUAGUAUGGUC - 32
• Evidence: not_experimental

Mature eca-miR-889-3p

• Accession: MIMAT0013175
• Description: Equus caballus eca-miR-889-3p mature miRNA
• Sequence: 49 - UUAAUAUCGGACAACCAUUGUU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131