Stem-loop eca-mir-181a

Accession

MI0012920

Description

Equus caballus eca-mir-181a precursor miRNA

Literature search

4 open access papers mention eca-mir-181a
(10 sentences)

Sequence

129168 reads, 19553 reads per million, 1 experiments

aagggcugccaggacccagccuucagaggacuccaaggAACAUUCAACGCUGUCGGUGAGUuugggauuugaaaaaaccaccgaccguugacuguaccuugggguccuua
.(((((((........)))))))..(((((((((((((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))))))))))))).

Structure

aagggcugccaggacccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguucc ugu aguugc  cagccac caaa    u
------------------------a             a   c      --       -    aaag 

Annotation confidence Not enough data

Genome context

chr25: 28672622-28672731 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-181a

Mature eca-miR-181a

• Accession: MIMAT0013178
• Description: Equus caballus eca-miR-181a mature miRNA
• Sequence: 39 - AACAUUCAACGCUGUCGGUGAGU - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131