Stem-loop eca-mir-181a-1

Accession

MI0012920

Description

Equus caballus eca-mir-181a-1 precursor miRNA

Literature search

17 open access papers mention eca-mir-181a-1
(104 sentences)

Sequence

10169914 reads, 13284.0 reads per million, 239 experiments

aagggcugccaggacccagccuucagaggacuccaaggAACAUUCAACGCUGUCGGUGAGUUugggauuugaaaaaACCACCGACCGUUGACUGUACCUugggguccuua
.(((((((........)))))))..(((((((((((((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))))))))))))).

Structure

aagggcugccaggacccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUUu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguUCC UGU AGUUGC  CAGCCAC CAaa    u
------------------------a             A   C      --       -    aaag 

Annotation confidence High

Genome context

25: 29260007-29260116 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-181a-1

Mature eca-miR-181a-5p

• Accession: MIMAT0013178
• Description: Equus caballus eca-miR-181a-5p mature miRNA
• Sequence: 39 - AACAUUCAACGCUGUCGGUGAGUU - 62
• Evidence: not_experimental

Mature eca-miR-181a-3p

• Accession: MIMAT0051469
• Description: Equus caballus eca-miR-181a-3p mature miRNA
• Sequence: 77 - ACCACCGACCGUUGACUGUACCU - 99
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131