Stem-loop eca-mir-181b-1

Accession

MI0012921

Description

Equus caballus eca-mir-181b-1 precursor miRNA

Literature search

11 open access papers mention eca-mir-181b-1
(45 sentences)

Sequence

808357 reads, 1739.0 reads per million, 234 experiments

cugauggcugcacucAACAUUCAUUGCUGUCGGUGGGUUugagucugaaucaaCUCACUGAUCAAUGAAUGCAAAcugcggaccaaaca
....((((((((.....(((((((((..(((((((((((.((.......)))))))))))))))))))))).....))))).)))....

Structure

cuga   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUU ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     GUAAGUAAC  UAGUCACUCaa cu  g
acaa   a     cAAAC         --           -  aa 

Annotation confidence High

Genome context

25: 29261286-29261374 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-181b-1

Mature eca-miR-181b-5p

• Accession: MIMAT0013179
• Description: Equus caballus eca-miR-181b-5p mature miRNA
• Sequence: 16 - AACAUUCAUUGCUGUCGGUGGGUU - 39
• Evidence: not_experimental

Mature eca-miR-181b-3p

• Accession: MIMAT0051470
• Description: Equus caballus eca-miR-181b-3p mature miRNA
• Sequence: 54 - CUCACUGAUCAAUGAAUGCAAA - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131