Stem-loop eca-let-7c-1

Accession

MI0012925

Description

Equus caballus eca-let-7c-1 precursor miRNA

Literature search

25 open access papers mention eca-let-7c-1
(49 sentences)

Sequence

2564069 reads, 3854.0 reads per million, 235 experiments

gguUGAGGUAGUAGGUUGUAUGGUUUagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCU
((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).))).)).

Structure

-  uU   G   U             Ua  g ua  c 
 gg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
 ||  ||| ||| |||||||||||||  || |  || c
 CC  UUC AUC UCCAACAUGUCaa  uu a  gu  
U  -U   G   U             --  g gg  c 

Annotation confidence High

Genome context

26: 16009461-16009531 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-let-7c-1

Mature eca-let-7c-5p

• Accession: MIMAT0013181
• Description: Equus caballus eca-let-7c-5p mature miRNA
• Sequence: 4 - UGAGGUAGUAGGUUGUAUGGUUU - 26
• Evidence: not_experimental

Mature eca-let-7c-3p

• Accession: MIMAT0051472
• Description: Equus caballus eca-let-7c-3p mature miRNA
• Sequence: 49 - CUGUACAACCUUCUAGCUUUCCU - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131