Stem-loop eca-mir-486

Accession

MI0012931

Description

Equus caballus eca-mir-486 precursor miRNA

Literature search

17 open access papers mention eca-mir-486
(63 sentences)

Sequence

16889773 reads, 90092.0 reads per million, 239 experiments

ggaUCCUGUACUGAGCUGCCCCGAGgcccuucacugugcccagCUCGGGGCAGCUCAGUACAGGAu
..(((((((((((((((((((((((((.(......).)))....))))))))))))))))))))))

Structure

gg                      ----   c uu 
  aUCCUGUACUGAGCUGCCCCGA    Ggc c  c
  ||||||||||||||||||||||    ||| |   
  uAGGACAUGACUCGACGGGGCU    ccg g  a
--                      Cgac   u uc 

Annotation confidence High

Genome context

27: 3721484-3721549 [+]

Mature eca-miR-486-5p

• Accession: MIMAT0013186
• Description: Equus caballus eca-miR-486-5p mature miRNA
• Sequence: 4 - UCCUGUACUGAGCUGCCCCGAG - 25
• Evidence: not_experimental

Mature eca-miR-486-3p

• Accession: MIMAT0013187
• Description: Equus caballus eca-miR-486-3p mature miRNA
• Sequence: 44 - CUCGGGGCAGCUCAGUACAGGA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131