Stem-loop eca-mir-135a-2

Accession

MI0012933

Description

Equus caballus eca-mir-135a-2 precursor miRNA

Literature search

2 open access papers mention eca-mir-135a-2
(13 sentences)

Sequence

8054 reads, 36.0 reads per million, 120 experiments

agauaaauucacucuagugcuuUAUGGCUUUUUAUUCCUAUGUGAuaguaauaaagucucaUGUAGGGAUGGAAGCCAUGAAauacauugugaaaaauca
.(((...(((((....(((.((((((((((((.((((((((((((.(.(.....).).)))))))))))))))))))))))).)))...)))))..))).

Structure

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau AAGUACCGAAGG UAGGGAUGUacu u a a
a   -aa     -uua   a            -            c g a 

Annotation confidence High

Genome context

28: 23312799-23312898 [+]

Mature eca-miR-135a-5p

• Accession: MIMAT0013078
• Description: Equus caballus eca-miR-135a-5p mature miRNA
• Sequence: 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
• Evidence: not_experimental

Mature eca-miR-135a-2-3p

• Accession: MIMAT0051411
• Description: Equus caballus eca-miR-135a-2-3p mature miRNA
• Sequence: 62 - UGUAGGGAUGGAAGCCAUGAA - 82
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131