Stem-loop eca-mir-331

Accession

MI0012934

Description

Equus caballus eca-mir-331 precursor miRNA

Literature search

3 open access papers mention eca-mir-331
(4 sentences)

Sequence

137837 reads, 3101.0 reads per million, 228 experiments

gaauuugguuuuguuuggguuuguUCUAGGUAUGGUCCCAGGGAUCCcagaucaaaccagGCCCCUGGGCCUAUCCUAGAACcaaccuaaac
............(((((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))))

Structure

gaauuugguuuu         u        U    U       AUC  agau 
            guuuggguu guUCUAGG AUGG CCCAGGG   Cc    c
            ||||||||| |||||||| |||| |||||||   ||    a
            caaauccaa CAAGAUCC UAUC GGGUCCC   Gg    a
------------         c        -    C       --C  acca 

Annotation confidence High

Genome context

28: 21450572-21450663 [+]

Mature eca-miR-331-5p

• Accession: MIMAT0061121
• Description: Equus caballus eca-miR-331-5p mature miRNA
• Sequence: 25 - UCUAGGUAUGGUCCCAGGGAUCC - 47
• Evidence: not_experimental

Mature eca-miR-331-3p

• Accession: MIMAT0013188
• Description: Equus caballus eca-miR-331-3p mature miRNA
• Sequence: 61 - GCCCCUGGGCCUAUCCUAGAAC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131