Stem-loop eca-mir-33a

Accession

MI0012935

Description

Equus caballus eca-mir-33a precursor miRNA

Literature search

2 open access papers mention eca-mir-33a
(6 sentences)

Sequence

14964 reads, 39.0 reads per million, 157 experiments

cugugGUGCAUUGUAGUUGCAUUGCAuguucuggcgguacccaugCAAUGUUUCCACAGUGCAUCAcag
((((((((((((((.(..((((((((((....((.....))))))))))))..).))))))))))))))

Structure

              A UU          uucu  c 
cugugGUGCAUUGU G  GCAUUGCAug    gg g
|||||||||||||| |  ||||||||||    || g
gacACUACGUGACA C  UGUAACguac    cc u
              C UU          ----  a 

Annotation confidence High

Genome context

28: 39390962-39391030 [+]

Mature eca-miR-33a-5p

• Accession: MIMAT0013189
• Description: Equus caballus eca-miR-33a-5p mature miRNA
• Sequence: 6 - GUGCAUUGUAGUUGCAUUGCA - 26
• Evidence: experimental ; Illumina [1]

Mature eca-miR-33a-3p

• Accession: MIMAT0051476
• Description: Equus caballus eca-miR-33a-3p mature miRNA
• Sequence: 46 - CAAUGUUUCCACAGUGCAUCA - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131