Stem-loop eca-mir-181a-2

Accession

MI0012936

Description

Equus caballus eca-mir-181a-2 precursor miRNA

Literature search

4 open access papers mention eca-mir-181a-2
(7 sentences)

Sequence

10704621 reads, 13006.0 reads per million, 234 experiments

ugagucugaggguugcuucagugAACAUUCAACGCUGUCGGUGAGUUuggaauuaaaaucaaaACCAUCGACCGUUGAUUGUGCCcuguggcuagccauccucuccucca
.(((...((((((((((.(((...(((.((((((..(((((((.((((.((.......)).))))))))))))))))).)))...))).))).)))...))))..)))..

Structure

-u   ucu    ---   -   u   ugA   U      CU       A    g  au 
  gag   gagg   guu gcu cag   ACA UCAACG  GUCGGUG GUUu ga  u
  |||   ||||   ||| ||| |||   ||| ||||||  ||||||| |||| ||  a
  cuc   cucc   cga cgg guc   UGU AGUUGC  CAGCUAC CAaa cu  a
ac   -cu    uac   u   u   CCG   U      --       -    a  aa 

Annotation confidence High

Genome context

30: 27734331-27734440 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-181a-2

Mature eca-miR-181a-5p

• Accession: MIMAT0013178
• Description: Equus caballus eca-miR-181a-5p mature miRNA
• Sequence: 24 - AACAUUCAACGCUGUCGGUGAGUU - 47
• Evidence: not_experimental

Mature eca-miR-181a-2-3p

• Accession: MIMAT0061122
• Description: Equus caballus eca-miR-181a-2-3p mature miRNA
• Sequence: 64 - ACCAUCGACCGUUGAUUGUGCC - 85
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131