Stem-loop eca-mir-215

Accession

MI0012938

Description

Equus caballus eca-mir-215 precursor miRNA

Literature search

5 open access papers mention eca-mir-215
(9 sentences)

Sequence

172816 reads, 2277.0 reads per million, 208 experiments

aucauuaagaaaugguauacaggaaaAUGACCUAUGAAUUGACAGACAAuaugacuaaguuugUCUGUCAUUUCUGUAGGCCAAUAuucuguauaucucugcuacuucaa
.......((....(((((((((((...((.((((((((.((((((((((..(.....)..)))))))))).))).))))).))...)))))))))))....)).......

Structure

aucauua  aaau           aaA  A     -   U          ua g 
       ag    gguauacagga   UG CCUAU GAA UGACAGACAA  u a
       ||    |||||||||||   || ||||| ||| ||||||||||  | c
       uc    cuauaugucuu   AC GGAUG CUU ACUGUCUguu  a u
aacuuca  gucu           AUA  C     U   U          ug a 

Annotation confidence High

Genome context

30: 10715793-10715902 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-215

Mature eca-miR-215-5p

• Accession: MIMAT0013190
• Description: Equus caballus eca-miR-215-5p mature miRNA
• Sequence: 27 - AUGACCUAUGAAUUGACAGACAA - 49
• Evidence: experimental ; Illumina [1]

Mature eca-miR-215-3p

• Accession: MIMAT0051477
• Description: Equus caballus eca-miR-215-3p mature miRNA
• Sequence: 64 - UCUGUCAUUUCUGUAGGCCAAUA - 86
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131