Stem-loop eca-mir-350

Accession

MI0012939

Description

Equus caballus eca-mir-350 precursor miRNA

Sequence

17946 reads, 22.0 reads per million, 143 experiments

aaacccuuugcuccuauaagaguAAAGUGCACGCGCUUUGGGACAgugaggaagaugaugUUCACAAAGCCCAUACACUUUUACUcuuuaggagag
..........((((((.((((((((((((...(.(((((((((((.............))))).)))))).)...))).)))))))))))))))..

Structure

aaacccuuug      u         -   CAC C      -     gugag 
          cuccua aagaguAAA GUG   G GCUUUG GGACA     g
          |||||| ||||||||| |||   | |||||| |||||     a
          gaggau uucUCAUUU CAC   C CGAAAC CUUgu     a
--------ga      -         U   AUA C      A     aguag 

Annotation confidence High

Genome context

30: 2087460-2087555 [+]

Mature eca-miR-350-5p

• Accession: MIMAT0051478
• Description: Equus caballus eca-miR-350-5p mature miRNA
• Sequence: 24 - AAAGUGCACGCGCUUUGGGACA - 45
• Evidence: not_experimental

Mature eca-miR-350-3p

• Accession: MIMAT0013191
• Description: Equus caballus eca-miR-350-3p mature miRNA
• Sequence: 61 - UUCACAAAGCCCAUACACUUUUACU - 85
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131