Stem-loop eca-mir-1298

Accession

MI0012944

Description

Equus caballus eca-mir-1298 precursor miRNA

Sequence

620 reads, 8.0 reads per million, 45 experiments

aagaugaggaguuaagagUUCAUUCGGCUGUCCAGAUGUAuccaaguacccaguuauuuggcaauaaauaCAUCUGGGCAACUGAUUGAACUUuucgcuuuucaugacuca
...(((((((((.(((((((((.((((.((((((((((((((((((((......)))))))......))))))))))))).)))).))))))))).)))))))))......

Structure

---aag         u         U    C             ------       cc 
      augaggagu aagagUUCA UCGG UGUCCAGAUGUAu      ccaagua  c
      ||||||||| ||||||||| |||| |||||||||||||      |||||||   
      uacuuuucg uuUUCAAGU AGUC ACGGGUCUACaua      gguuuau  a
acucag         c         U    A             aauaac       ug 

Annotation confidence High

Genome context

X: 94904622-94904732 [+]

Mature eca-miR-1298-5p

• Accession: MIMAT0013196
• Description: Equus caballus eca-miR-1298-5p mature miRNA
• Sequence: 19 - UUCAUUCGGCUGUCCAGAUGUA - 40
• Evidence: not_experimental

Mature eca-miR-1298-3p

• Accession: MIMAT0051481
• Description: Equus caballus eca-miR-1298-3p mature miRNA
• Sequence: 71 - CAUCUGGGCAACUGAUUGAACUU - 93
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131