Stem-loop eca-mir-221

Accession

MI0012951

Description

Equus caballus eca-mir-221 precursor miRNA

Literature search

26 open access papers mention eca-mir-221
(68 sentences)

Sequence

6936061 reads, 4684.0 reads per million, 237 experiments

ccaacauccaggucuggggcaugaACCUGGCAUACAAUGUAGAUUUCUGuguuucuugggcaacAGCUACAUUGUCUGCUGGGUUUCaggcuaccuggaaacauguucuc
..(((((((((((....(((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))))))))))....))))...

Structure

-cc    ----       cugg   a    -       U         AUUU    -    c 
   aaca    uccaggu    ggc ugaA CCUGGCA ACAAUGUAG    CUGu guuu  
   ||||    |||||||    ||| |||| ||||||| |||||||||    |||| |||| u
   uugu    aggucca    ucg aCUU GGGUCGU UGUUACAUC    GAca cggg  
cuc    acaa       ----   g    U       C         ----    a    u 

Annotation confidence High

Genome context

X: 38513896-38514005 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-221

Mature eca-miR-221-5p

• Accession: MIMAT0061123
• Description: Equus caballus eca-miR-221-5p mature miRNA
• Sequence: 25 - ACCUGGCAUACAAUGUAGAUUUCUG - 49
• Evidence: not_experimental

Mature eca-miR-221-3p

• Accession: MIMAT0013203
• Description: Equus caballus eca-miR-221-3p mature miRNA
• Sequence: 65 - AGCUACAUUGUCUGCUGGGUUUC - 87
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131