Stem-loop eca-mir-222

Accession

MI0012952

Description

Equus caballus eca-mir-222 precursor miRNA

Literature search

13 open access papers mention eca-mir-222
(70 sentences)

Sequence

3980542 reads, 5987.0 reads per million, 235 experiments

gcugcuggaaaguguagguacccucaauGGCUCAGUAGCCAGUGUAGAUCCUGucuuuuguaaucagcAGCUACAUCUGGCUACUGGGUCUCUGauggcaucuucuagcu
...((((((......((((.((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).)).)))))))))).

Structure

gcu      aagugu    a  c   au              -     AUC   ucuu 
   gcugga      aggu cc uca  GGCUCAGUAGCCAG UGUAG   CUG    u
   ||||||      |||| || |||  |||||||||||||| |||||   |||    u
   cgaucu      ucua gg aGU  CUGGGUCAUCGGUC ACAUC   gac    g
--u      ------    c  u   CU              U     GAc   uaau 

Annotation confidence High

Genome context

X: 38514675-38514784 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-222

Mature eca-miR-222-5p

• Accession: MIMAT0051484
• Description: Equus caballus eca-miR-222-5p mature miRNA
• Sequence: 29 - GGCUCAGUAGCCAGUGUAGAUCCUG - 53
• Evidence: not_experimental

Mature eca-miR-222-3p

• Accession: MIMAT0013204
• Description: Equus caballus eca-miR-222-3p mature miRNA
• Sequence: 69 - AGCUACAUCUGGCUACUGGGUCUCUG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131