Stem-loop eca-mir-223

Accession

MI0012953

Description

Equus caballus eca-mir-223 precursor miRNA

Literature search

26 open access papers mention eca-mir-223
(56 sentences)

Sequence

167886 reads, 739.0 reads per million, 186 experiments

gcccagccuccugcagugccacgcucCGUGUAUUUGACAAGCUGAGUUggacacuccaugugguagagUGUCAGUUUGUCAAAUACCCCAagugcggcacaugc
............((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).)))

Structure

gcccagccuccu   -     a    cC U              GAGUUg       cau 
            gca gugcc cgcu  G GUAUUUGACAAGCU      gacacuc   g
            ||| ||||| ||||  | ||||||||||||||      |||||||   u
            cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
------------   a     c    AC C              ------       aug 

Annotation confidence High

Genome context

X: 51587749-51587852 [+]

Mature eca-miR-223-5p

• Accession: MIMAT0051485
• Description: Equus caballus eca-miR-223-5p mature miRNA
• Sequence: 27 - CGUGUAUUUGACAAGCUGAGUU - 48
• Evidence: not_experimental

Mature eca-miR-223-3p

• Accession: MIMAT0013205
• Description: Equus caballus eca-miR-223-3p mature miRNA
• Sequence: 69 - UGUCAGUUUGUCAAAUACCCCA - 90
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131