Stem-loop eca-mir-374a

Accession

MI0012959

Description

Equus caballus eca-mir-374a precursor miRNA

Literature search

4 open access papers mention eca-mir-374a
(5 sentences)

Sequence

432656 reads, 549.0 reads per million, 179 experiments

uacaucggccaUUAUAAUACAACCUGAUAAGUGUuacagcaCUUAUCAGGUUGUAUUGUAAUUgucugugua
(((((.(((.((((((((((((((((((((((((....)))))))))))))))))))))))).))).)))))

Structure

     c   c                        u 
uacau ggc aUUAUAAUACAACCUGAUAAGUGU a
||||| ||| ||||||||||||||||||||||||  
augug cug UAAUGUUAUGUUGGACUAUUCacg c
     u   U                        a 

Annotation confidence High

Genome context

X: 58620768-58620839 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-374a

Mature eca-miR-374a-5p

• Accession: MIMAT0013213
• Description: Equus caballus eca-miR-374a-5p mature miRNA
• Sequence: 12 - UUAUAAUACAACCUGAUAAGUGU - 34
• Evidence: not_experimental

Mature eca-miR-374a-3p

• Accession: MIMAT0061124
• Description: Equus caballus eca-miR-374a-3p mature miRNA
• Sequence: 42 - CUUAUCAGGUUGUAUUGUAAUU - 63
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131