Stem-loop eca-mir-374b

Accession

MI0012960

Description

Equus caballus eca-mir-374b precursor miRNA

Literature search

4 open access papers mention eca-mir-374b
(13 sentences)

Sequence

70687 reads, 117.0 reads per million, 172 experiments

acucggauggAUAUAAUACAACCUGCUAAGUGuccuagCACUUAUCAGGUUGUAUUAUcauuguccgugucu
((.(((((((..(((((((((((((.(((((((....))))))).)))))))))))))..))))))).))..

Structure

--  u       AU             C       c 
  ac cggaugg  AUAAUACAACCUG UAAGUGu c
  || |||||||  ||||||||||||| |||||||  
  ug gccuguu  UAUUAUGUUGGAC AUUCACg u
uc  u       ac             U       a 

Annotation confidence Medium

Genome context

X: 58556190-58556261 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-374b

Mature eca-miR-374b-5p

• Accession: MIMAT0013214
• Description: Equus caballus eca-miR-374b-5p mature miRNA
• Sequence: 11 - AUAUAAUACAACCUGCUAAGUG - 32
• Evidence: not_experimental

Mature eca-miR-374b-3p

• Accession: MIMAT0051488
• Description: Equus caballus eca-miR-374b-3p mature miRNA
• Sequence: 39 - CACUUAUCAGGUUGUAUUAU - 58
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131