Stem-loop eca-mir-424

Accession

MI0012963

Description

Equus caballus eca-mir-424 precursor miRNA

Literature search

6 open access papers mention eca-mir-424
(29 sentences)

Sequence

131777 reads, 285.0 reads per million, 208 experiments

cgaggggaugCAGCAGCAAUUCAUGUUUUGAAGugauuuaaacgguuCAAAACGUGAGGCGCUGCUAUACccccucgcggggaaguuggaaggugggg
(((((((.((.((((((..(((((((((((((.((.......)).)))))))))))))..)))))).)).))))))).....................

Structure

---------------------       a  C      AA             G  au 
                     cgagggg ug AGCAGC  UUCAUGUUUUGAA ug  u
                     ||||||| || ||||||  ||||||||||||| ||  u
                     gcucccc AU UCGUCG  GAGUGCAAAACuu gc  a
gggguggaagguugaaggggc       C  A      CG             g  aa 

Annotation confidence High

Genome context

X: 111021443-111021540 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-424

Mature eca-miR-424-5p

• Accession: MIMAT0013217
• Description: Equus caballus eca-miR-424-5p mature miRNA
• Sequence: 11 - CAGCAGCAAUUCAUGUUUUGAAG - 33
• Evidence: not_experimental

Mature eca-miR-424-3p

• Accession: MIMAT0061125
• Description: Equus caballus eca-miR-424-3p mature miRNA
• Sequence: 48 - CAAAACGUGAGGCGCUGCUAUAC - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131