Stem-loop eca-mir-450a

Accession

MI0012965

Description

Equus caballus eca-mir-450a precursor miRNA

Literature search

4 open access papers mention eca-mir-450a
(8 sentences)

Sequence

427936 reads, 455.0 reads per million, 163 experiments

gaaagaugcuaaacuguUUUUGCGAUGUGUUCCUAAUAUgcaguauaaauauAUUGGGAGCAUUUUGCAUGCAUgguuuuguaucaauaua
....(((((.(((((((...(((((.((((((((((((((.........)))))))))))))).)))))...))))))).)))))......

Structure

--gaaa     u       UUU     U              cag 
      gaugc aaacugu   UGCGA GUGUUCCUAAUAUg   u
      ||||| |||||||   ||||| ||||||||||||||   a
      cuaug uuuggUA   ACGUU UACGAGGGUUAuau   u
auauaa     u       CGU     U              aaa 

Annotation confidence High

Genome context

X: 111015388-111015478 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-450a

Mature eca-miR-450a-5p

• Accession: MIMAT0013219
• Description: Equus caballus eca-miR-450a-5p mature miRNA
• Sequence: 18 - UUUUGCGAUGUGUUCCUAAUAU - 39
• Evidence: not_experimental

Mature eca-miR-450a-3p

• Accession: MIMAT0051491
• Description: Equus caballus eca-miR-450a-3p mature miRNA
• Sequence: 53 - AUUGGGAGCAUUUUGCAUGCAU - 74
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131