Stem-loop eca-mir-450c

Accession

MI0012967

Description

Equus caballus eca-mir-450c precursor miRNA

Literature search

1 open access papers mention eca-mir-450c
(1 sentences)

Sequence

733147 reads, 717.0 reads per million, 166 experiments

gaaagaugcucaacuauUUUUGCGAUGUGUUCCUAAUACguaauauaaauguAUUGGGAACAUUUUGCAUUCAUAGuuuuguaucaaua
....(((((..((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))..)))))....

Structure

gaaa     uc      UUU     U               aa 
    gaugc  aacuau   UGCGA GUGUUCCUAAUACgu  u
    |||||  ||||||   ||||| |||||||||||||||  a
    cuaug  uuGAUA   ACGUU UACAAGGGUUAugua  u
auaa     uu      CUU     U               aa 

Annotation confidence High

Genome context

X: 111015523-111015611 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-450c

Mature eca-miR-450c-5p

• Accession: MIMAT0013222
• Description: Equus caballus eca-miR-450c-5p mature miRNA
• Sequence: 18 - UUUUGCGAUGUGUUCCUAAUAC - 39
• Evidence: not_experimental

Mature eca-miR-450c-3p

• Accession: MIMAT0051492
• Description: Equus caballus eca-miR-450c-3p mature miRNA
• Sequence: 53 - AUUGGGAACAUUUUGCAUUCAUAG - 76
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131