Stem-loop eca-mir-500-2

Accession

MI0012969

Description

Equus caballus eca-mir-500-2 precursor miRNA

Literature search

1 open access papers mention eca-mir-500-2
(1 sentences)

Sequence

424605 reads, 877.0 reads per million, 238 experiments

gcucccccucucUAAUCCUUGCUACCUGGGUGAGAgugcuuucugaaugcaAUGCACCUGGGCAAGGAUUCcgagagggagagu
((((.(((((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))))).))))

Structure

    c       -U         UAC       AGAg   uuu 
gcuc cccucuc  AAUCCUUGC   CUGGGUG    ugc   c
|||| |||||||  |||||||||   |||||||    |||   u
ugag gggagag  UUAGGAACG   GGUCCAC    acg   g
    a       cC         ---       -GUA   uaa 

Annotation confidence High

Genome context

X: 41480016-41480099 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from eca-mir-500-2

Mature eca-miR-500-5p

• Accession: MIMAT0013223
• Description: Equus caballus eca-miR-500-5p mature miRNA
• Sequence: 13 - UAAUCCUUGCUACCUGGGUGAGA - 35
• Evidence: not_experimental

Mature eca-miR-500-3p

• Accession: MIMAT0051493
• Description: Equus caballus eca-miR-500-3p mature miRNA
• Sequence: 52 - AUGCACCUGGGCAAGGAUUC - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131