Stem-loop eca-mir-501

Accession

MI0012970

Description

Equus caballus eca-mir-501 precursor miRNA

Literature search

3 open access papers mention eca-mir-501
(31 sentences)

Sequence

308575 reads, 735.0 reads per million, 238 experiments

gcucucccucucuCAUCCUUCGUCCCUGGGUGAGAGUgcuuuccgaaugcaAUGCACCUGGGCAAGGAUUCcagagggcgaggc
.(((.((((((...((((((.((((..(((((....(((.........)))...)))))))))))))))...)))))).)))..

Structure

-g   u      cuC      C    CU     AGAG   uuu 
  cuc cccucu   AUCCUU GUCC  GGGUG    Ugc   c
  ||| ||||||   |||||| ||||  |||||    |||   c
  gag gggaga   UAGGAA CGGG  UCCAC    acg   g
cg   c      cCU      -    --     -GUA   uaa 

Annotation confidence High

Genome context

X: 41479481-41479564 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from eca-mir-501

Mature eca-miR-501-5p

• Accession: MIMAT0013224
• Description: Equus caballus eca-miR-501-5p mature miRNA
• Sequence: 14 - CAUCCUUCGUCCCUGGGUGAGAGU - 37
• Evidence: not_experimental

Mature eca-miR-501-3p

• Accession: MIMAT0051494
• Description: Equus caballus eca-miR-501-3p mature miRNA
• Sequence: 52 - AUGCACCUGGGCAAGGAUUC - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131