Stem-loop eca-mir-502

Accession

MI0012971

Description

Equus caballus eca-mir-502 precursor miRNA

Literature search

1 open access papers mention eca-mir-502
(1 sentences)

Sequence

401 reads, 61 reads per million, 1 experiments

ugcucccccucucuaAUCCUUGCUAUCUGGGUGCUAgugcugucucaaugcAAUGCACCUGGGCAAGGAUUCAgagaggg
......(((((((((((((((((...((((((((...(((.........)))..))))))))))))))))).))))))))

Structure

ugcucc        -         UAU        UAg   ugu 
      cccucucu aAUCCUUGC   CUGGGUGC   ugc   c
      |||||||| |||||||||   ||||||||   |||   u
      gggagagA UUAGGAACG   GGUCCACG   Acg   c
------        C         ---        -UA   uaa 

Annotation confidence High

Genome context

chrX: 40077407-40077486 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from eca-mir-502

Mature eca-miR-502-5p

• Accession: MIMAT0013225
• Description: Equus caballus eca-miR-502-5p mature miRNA
• Sequence: 16 - AUCCUUGCUAUCUGGGUGCUA - 36
• Evidence: not_experimental

Mature eca-miR-502-3p

• Accession: MIMAT0013226
• Description: Equus caballus eca-miR-502-3p mature miRNA
• Sequence: 52 - AAUGCACCUGGGCAAGGAUUCA - 73
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131