Stem-loop eca-mir-503

Accession

MI0012972

Description

Equus caballus eca-mir-503 precursor miRNA

Literature search

7 open access papers mention eca-mir-503
(8 sentences)

Sequence

52629 reads, 75.0 reads per million, 173 experiments

ugcccUAGCAGCGGGAACAGUACUGCAGugggcgaucggugcucugGAGUAUUGUUCCUGCUGCCCGGgca
(((((..(((((((((((((((((.(((.(.((.....)).).))).)))))))))))))))))..)))))

Structure

     UA                 G   u g  g 
ugccc  GCAGCGGGAACAGUACU CAG g gc a
|||||  ||||||||||||||||| ||| | || u
acgGG  CGUCGUCCUUGUUAUGA guc c ug c
     CC                 G   u g  g 

Annotation confidence High

Genome context

X: 111021114-111021184 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-503

Mature eca-miR-503-5p

• Accession: MIMAT0013227
• Description: Equus caballus eca-miR-503-5p mature miRNA
• Sequence: 6 - UAGCAGCGGGAACAGUACUGCAG - 28
• Evidence: not_experimental

Mature eca-miR-503-3p

• Accession: MIMAT0051495
• Description: Equus caballus eca-miR-503-3p mature miRNA
• Sequence: 47 - GAGUAUUGUUCCUGCUGCCCGG - 68
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131