Stem-loop eca-mir-504

Accession

MI0012973

Description

Equus caballus eca-mir-504 precursor miRNA

Literature search

1 open access papers mention eca-mir-504
(1 sentences)

Sequence

35040 reads, 150.0 reads per million, 203 experiments

gcugcuguugggAGACCCUGGUCUGCACUCUAUCuguaugcuuaCUGAAGGGAGCGCAGGGCAGGGUUUcccauacagagggc
(((.((((((((((((((((.(((((.((((.((.(((....))).))..)))).))))).)))))))))))).))))..)))

Structure

   -g    -            G     A    -A  u   u 
gcu  cugu ugggAGACCCUG UCUGC CUCU  UC gua g
|||  |||| |||||||||||| ||||| ||||  || |||  
cgg  gaca acccUUUGGGAC GGACG GAGG  AG Cau c
   ga    u            G     C    GA  U   u 

Annotation confidence High

Genome context

X: 114357336-114357418 [-]

Mature eca-miR-504-5p

• Accession: MIMAT0013228
• Description: Equus caballus eca-miR-504-5p mature miRNA
• Sequence: 13 - AGACCCUGGUCUGCACUCUAUC - 34
• Evidence: not_experimental

Mature eca-miR-504-3p

• Accession: MIMAT0051496
• Description: Equus caballus eca-miR-504-3p mature miRNA
• Sequence: 45 - CUGAAGGGAGCGCAGGGCAGGGUUU - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131