Stem-loop eca-mir-505

Accession

MI0012974

Description

Equus caballus eca-mir-505 precursor miRNA

Literature search

2 open access papers mention eca-mir-505
(5 sentences)

Sequence

92871 reads, 1220.0 reads per million, 232 experiments

gaugcacccaguggGGGAGCCAGGAAGUAUUGAUGUUucugccaguuuagCGUCAACACUUGCUGGUUUCCUcucuggagcauc
(((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).)))))

Structure

     ac    u           G    A        ucug 
gaugc  ccag ggGGGAGCCAG AAGU UUGAUGUU    c
|||||  |||| ||||||||||| |||| ||||||||    c
cuacg  gguc cUCCUUUGGUC UUCA AACUGCga    a
     -a    u           G    C        uuug 

Annotation confidence High

Genome context

X: 115406712-115406795 [-]

Mature eca-miR-505-5p

• Accession: MIMAT0051497
• Description: Equus caballus eca-miR-505-5p mature miRNA
• Sequence: 15 - GGGAGCCAGGAAGUAUUGAUGUU - 37
• Evidence: not_experimental

Mature eca-miR-505-3p

• Accession: MIMAT0013229
• Description: Equus caballus eca-miR-505-3p mature miRNA
• Sequence: 51 - CGUCAACACUUGCUGGUUUCCU - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131