Stem-loop eca-mir-509a

Accession

MI0012977

Description

Equus caballus eca-mir-509a precursor miRNA

Literature search

1 open access papers mention eca-mir-509a
(1 sentences)

Sequence

39122 reads, 180.0 reads per million, 81 experiments

cauacugugugugguacccUACUGCAGACAGUGGCAAUCAUguauaauuaaaaaUGAUUGACACCUCUGCAAGUGUaguaacacaugacacaugagau
(((..((((((((.(((..(((((((((..(((.(((((((............))))))).))).))))).))))..))).))))).))).)))....

Structure

----   ac   -     g   cc    -     CA   G       guaua 
    cau  ugu gugug uac  UACU GCAGA  GUG CAAUCAU     a
    |||  ||| ||||| |||  |||| |||||  ||| |||||||      
    gua  aca uacac aug  GUGA CGUCU  CAC GUUAGUa     u
uaga   -c   g     a   aU    A     -C   A       aaaau 

Annotation confidence High

Genome context

X: 120886540-120886637 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from eca-mir-509a

Mature eca-miR-509a-5p

• Accession: MIMAT0013233
• Description: Equus caballus eca-miR-509a-5p mature miRNA
• Sequence: 20 - UACUGCAGACAGUGGCAAUCAU - 41
• Evidence: not_experimental

Mature eca-miR-509a-3p

• Accession: MIMAT0061126
• Description: Equus caballus eca-miR-509a-3p mature miRNA
• Sequence: 55 - UGAUUGACACCUCUGCAAGUGU - 76
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131