Stem-loop eca-mir-532

Accession

MI0012979

Description

Equus caballus eca-mir-532 precursor miRNA

Literature search

2 open access papers mention eca-mir-532
(3 sentences)

Sequence

2189 reads, 331 reads per million, 1 experiments

gauuugcuuucucucuuaCAUGCCUUGAGUGUAGGACCGUuggcaucuuaauuacCCUCCCACACCCAAGGCUUGCAggagggcaagccu
.....((((.(((((((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).))))))).))))..

Structure

gauuu    u       a  U      A    A   CC  uggca 
     gcuu cucucuu CA GCCUUG GUGU GGA  GU     u
     |||| ||||||| || |||||| |||| |||  ||     c
     cgaa gggaggA GU CGGAAC CACA CCU  ca     u
---uc    c       C  U      C    C   CC  uuaau 

Annotation confidence High

Genome context

chrX: 40068460-40068549 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from eca-mir-532

Mature eca-miR-532-5p

• Accession: MIMAT0013235
• Description: Equus caballus eca-miR-532-5p mature miRNA
• Sequence: 19 - CAUGCCUUGAGUGUAGGACCGU - 40
• Evidence: not_experimental

Mature eca-miR-532-3p

• Accession: MIMAT0013236
• Description: Equus caballus eca-miR-532-3p mature miRNA
• Sequence: 56 - CCUCCCACACCCAAGGCUUGCA - 77
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131