Stem-loop eca-mir-542

Accession

MI0012980

Description

Equus caballus eca-mir-542 precursor miRNA

Literature search

1 open access papers mention eca-mir-542
(1 sentences)

Sequence

1719 reads, 260 reads per million, 1 experiments

aggaccucagacauCUCGGGGAUCAUCAUGUCACGAgauaccacugugcacuUGUGACAGAUUGAUAACUGAAAggucugggagcc
.((..(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))..))

Structure

a  ac       auC    GG    UCA         -a   c 
 gg  cucagac   UCGG  AUCA   UGUCACGAg  uac a
 ||  |||||||   ||||  ||||   |||||||||  |||  
 cc  gggucug   AGUC  UAGU   ACAGUGUuc  gug c
-  ga       gAA    AA    UAG         ac   u 

Annotation confidence High

Genome context

chrX: 106949741-106949826 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-542

Mature eca-miR-542-5p

• Accession: MIMAT0013237
• Description: Equus caballus eca-miR-542-5p mature miRNA
• Sequence: 15 - CUCGGGGAUCAUCAUGUCACGA - 36
• Evidence: not_experimental

Mature eca-miR-542-3p

• Accession: MIMAT0013238
• Description: Equus caballus eca-miR-542-3p mature miRNA
• Sequence: 53 - UGUGACAGAUUGAUAACUGAAA - 74
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131