Stem-loop eca-mir-660

Accession

MI0012983

Description

Equus caballus eca-mir-660 precursor miRNA

Literature search

3 open access papers mention eca-mir-660
(5 sentences)

Sequence

75890 reads, 134.0 reads per million, 185 experiments

cugcuccuucuccugUACCCAUUGCAUAUCGGAGUUGUgaauucugaaagcACCUCCUGUGUGCAUGGAUUACAggagggcgagccuugucaucaug
..((((.((((((((((.((((.((((((.((((.(((...........))).)))).))))))))))..)))))))))).))))............

Structure

----------cu    c          -C    U      C    U   gaau 
            gcuc uucuccugUA  CCAU GCAUAU GGAG UGU    u
            |||| ||||||||||  |||| |||||| |||| |||    c
            cgag gggaggACAU  GGUA CGUGUG CCUC Acg    u
guacuacuguuc    c          UA    -      U    C   aaag 

Annotation confidence High

Genome context

X: 41481445-41481541 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from eca-mir-660

Mature eca-miR-660-5p

• Accession: MIMAT0013241
• Description: Equus caballus eca-miR-660-5p mature miRNA
• Sequence: 16 - UACCCAUUGCAUAUCGGAGUUGU - 38
• Evidence: not_experimental

Mature eca-miR-660-3p

• Accession: MIMAT0051499
• Description: Equus caballus eca-miR-660-3p mature miRNA
• Sequence: 52 - ACCUCCUGUGUGCAUGGAUUACA - 74
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131