Stem-loop eca-mir-98

Accession

MI0012988

Description

Equus caballus eca-mir-98 precursor miRNA

Literature search

6 open access papers mention eca-mir-98
(6 sentences)

Sequence

489235 reads, 1072.0 reads per million, 225 experiments

aggauucugcucaugccagggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaauuagaagauaaCUAUACAACUUACUACUUUCCcugguguguggcauauuca
.((((..((((((((((((((.(((((((((((((((((.((((((((((...........)))))).........)))).))))))))))))))))))))))))))).)))).)))).

Structure

a    uc    -          U                 U    ---------      aggg 
 ggau  ugcu caugccaggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||||  |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
 cuua  acgg guguggucCC UUUCAUCAUUCAACAUA Caau         accccg    u
a    -u    u          -                 U    agaagauua      gauu 

Annotation confidence High

Genome context

X: 44906078-44906196 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-98

Mature eca-miR-98-5p

• Accession: MIMAT0013247
• Description: Equus caballus eca-miR-98-5p mature miRNA
• Sequence: 22 - UGAGGUAGUAAGUUGUAUUGUU - 43
• Evidence: not_experimental

Mature eca-miR-98-3p

• Accession: MIMAT0051500
• Description: Equus caballus eca-miR-98-3p mature miRNA
• Sequence: 80 - CUAUACAACUUACUACUUUCC - 100
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131