Stem-loop bmo-mir-306b

Accession

MI0012989

Description

Bombyx mori bmo-mir-306b precursor miRNA

Literature search

3 open access papers mention bmo-mir-306b
(20 sentences)

Sequence

401 reads, 7.0 reads per million, 33 experiments

gagcccgcgcUGAGGCACGAGGCGGCUCUGAgaccggcaccacuCAGAGUCACCUAGUACCUGAGGcggccgcccg
(.((((((.((.(((.((.(((.(((((((((..........))))))))).))).)).))).))))))..)).).

Structure

- a  --    g  G   C  G   C         accg 
 g gc  ccgc cU AGG AC AGG GGCUCUGAg    g
 | ||  |||| || ||| || ||| |||||||||     
 c cg  ggcG GA UCC UG UCC CUGAGACuc    c
g c  cc    -  G   A  A   A         acca 

Annotation confidence High

Genome context

dbj|BSVE01000012.1|: 17543182-17543257 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-306b

Mature bmo-miR-306b-5p

• Accession: MIMAT0013782
• Description: Bombyx mori bmo-miR-306b-5p mature miRNA
• Sequence: 11 - UGAGGCACGAGGCGGCUCUGA - 31
• Evidence: not_experimental

Mature bmo-miR-306b-3p

• Accession: MIMAT0053209
• Description: Bombyx mori bmo-miR-306b-3p mature miRNA
• Sequence: 45 - CAGAGUCACCUAGUACCUGAGG - 66
• Evidence: not_experimental

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148