miRBase entry: bmo-mir-2833b

Stem-loop bmo-mir-2833b


Accession
MI0012997
Description
Bombyx mori bmo-mir-2833b precursor miRNA


Sequence

542 reads, 13.0 reads per million, 30 experiments
agaaUUCGCGGUAAACAGUGGAAAcugguccucauauguugAGAGAUUGGAAAUGUACUUUUuagugaauaaa
...((((((..((((.((((.(..((((((((((.....)))).))))))...).)))).))))))))))...

Structure
aga      GG    C    G -AA      -    u 
   aUUCGC  UAAA AGUG A   cugguc cuca a
   ||||||  |||| |||| |   |||||| |||| u
   uaagug  auUU UCAU U   GGUUAG GAgu g
aaa      --    U    G AAA      A    u 


Annotation confidence Medium
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Genome context
dbj|BSVE01000030.1|: 6017630-6017702 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-2833b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2833b-5p

Accession MIMAT0053212
Description Bombyx mori bmo-miR-2833b-5p mature miRNA
Sequence 5 - UUCGCGGUAAACAGUGGAAA - 24
Evidence not_experimental

Mature bmo-miR-2833b-3p

Accession MIMAT0013791
Description Bombyx mori bmo-miR-2833b-3p mature miRNA
Sequence 42 - AGAGAUUGGAAAUGUACUUUU - 62
Evidence not_experimental

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148