Stem-loop ola-mir-430a-1

Accession

MI0013008

Description

Oryzias latipes ola-mir-430a-1 precursor miRNA

Literature search

3 open access papers mention ola-mir-430a-1
(11 sentences)

Sequence

5351 reads, 469.0 reads per million, 42 experiments

ggacauaaagaugaCCUUGACACAGGCACUGACUCUUUCuucuuuguagUAAGUGCUACUUGUUGGGGUAuuuuuggugucc
((((((.((((..(((((((((..((((((.((((..........).))).))))))...)))))))))..)))).))))))

Structure

      a    ug         -CA      G   - UUUC 
ggacau aaga  aCCUUGACA   GGCACU ACU C    u
|||||| ||||  |||||||||   |||||| ||| |     
ccugug uuuu  UGGGGUUGU   UCGUGA Uga g    u
      g    uA         UCA      A   u uuuc 

Annotation confidence Medium

Genome context

4: 6743-6824 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ola-mir-430a-1

Mature ola-miR-430a-5p

• Accession: MIMAT0057054
• Description: Oryzias latipes ola-miR-430a-5p mature miRNA
• Sequence: 15 - CCUUGACACAGGCACUGACUCUUUC - 39
• Evidence: experimental ; in-situ [1], Northern [1]

Mature ola-miR-430a-3p

• Accession: MIMAT0013804
• Description: Oryzias latipes ola-miR-430a-3p mature miRNA
• Sequence: 50 - UAAGUGCUACUUGUUGGGGUA - 70
• Evidence: experimental ; in-situ [1], Northern [1]

References

1. PubMed ID: 19770025
   Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development
   "Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K"
   "Gene (2010) 449:41-49