Stem-loop ola-mir-430c-1

Accession

MI0013009

Description

Oryzias latipes ola-mir-430c-1 precursor miRNA

Literature search

3 open access papers mention ola-mir-430c-1
(11 sentences)

Sequence

33970 reads, 4378.0 reads per million, 46 experiments

cagacauucagaugaCCUUAACAUAGGCACUGACUUGAAUaucuuuGCAGUAAGUGCUACAUGUUGGGGUAgucuuggugucuagc
.(((((((.((((.((((((((((.((((((.(((..((.....))..))).))))))..)))))))))).)))).)))))))...

Structure

--c       c    g          -A      G   UG  U 
   agacauu agau aCCUUAACAU  GGCACU ACU  AA a
   ||||||| |||| ||||||||||  |||||| |||  || u
   ucugugg ucug UGGGGUUGUA  UCGUGA UGA  uu c
cga       u    A          CA      A   CG  u 

Annotation confidence Medium

Genome context

4: 6962-7047 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ola-mir-430c-1

Mature ola-miR-430c-1-5p

• Accession: MIMAT0057055
• Description: Oryzias latipes ola-miR-430c-1-5p mature miRNA
• Sequence: 16 - CCUUAACAUAGGCACUGACUUGAAU - 40
• Evidence: experimental ; in-situ [1], Northern [1]

Mature ola-miR-430c-3p

• Accession: MIMAT0013805
• Description: Oryzias latipes ola-miR-430c-3p mature miRNA
• Sequence: 47 - GCAGUAAGUGCUACAUGUUGGGGUA - 71
• Evidence: experimental ; in-situ [1], Northern [1]

References

1. PubMed ID: 19770025
   Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development
   "Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K"
   "Gene (2010) 449:41-49