Stem-loop ola-mir-430b-1

Accession

MI0013010

Description

Oryzias latipes ola-mir-430b-1 precursor miRNA

Literature search

3 open access papers mention ola-mir-430b-1
(12 sentences)

Sequence

13438 reads, 1013.0 reads per million, 40 experiments

ggacauaaagaUGACCUUGACACAGGCACUGACUuuuucuucuuuguagUAAGUGCUACAUGUUGGGGUAAuuuuggugucc
((((((.(((((.(((((((((..((((((.(((.............))).))))))...))))))))).))))).))))))

Structure

      a     G         -CA      G   uuuuc 
ggacau aagaU ACCUUGACA   GGCACU ACU     u
|||||| ||||| |||||||||   |||||| |||     u
ccugug uuuuA UGGGGUUGU   UCGUGA Uga     c
      g     A         ACA      A   uguuu 

Annotation confidence Medium

Genome context

4: 7977-8058 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ola-mir-430b-1

Mature ola-miR-430b-1-5p

• Accession: MIMAT0057060
• Description: Oryzias latipes ola-miR-430b-1-5p mature miRNA
• Sequence: 12 - UGACCUUGACACAGGCACUGACU - 34
• Evidence: experimental ; in-situ [1], Northern [1]

Mature ola-miR-430b-3p

• Accession: MIMAT0013806
• Description: Oryzias latipes ola-miR-430b-3p mature miRNA
• Sequence: 50 - UAAGUGCUACAUGUUGGGGUAA - 71
• Evidence: experimental ; in-situ [1], Northern [1]

References

1. PubMed ID: 19770025
   Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development
   "Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K"
   "Gene (2010) 449:41-49