Stem-loop ola-mir-430d-1

Accession

MI0013013

Description

Oryzias latipes ola-mir-430d-1 precursor miRNA

Literature search

3 open access papers mention ola-mir-430d-1
(12 sentences)

Sequence

2976 reads, 340.0 reads per million, 38 experiments

gaaucgcuucgagaccaucucaaacaGAGACACUGAUGGUUUUGAUUUCCUAAGUGCUUCUCUUUGGGGUUGucucaauguugguuu
(((((((...(((((.((((((((.((((.((((...((.........))..)))).)))).)))))))).)))))...).))))))

Structure

      - uuc     c        c    A    GAU  UUU 
gaaucg c   gagac aucucaaa aGAG CACU   GG   U
|||||| |   ||||| |||||||| |||| ||||   ||   G
uuuggu g   cucuG UGGGGUUU UCUU GUGA   CC   A
      u uaa     U        C    C    -AU  UUU 

Annotation confidence Low

Genome context

4: 2061569-2061655 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from ola-mir-430d-1

Mature ola-miR-430d-1-5p

• Accession: MIMAT0057062
• Description: Oryzias latipes ola-miR-430d-1-5p mature miRNA
• Sequence: 27 - GAGACACUGAUGGUUUUGAUUUCCUA - 52
• Evidence: experimental ; in-situ [1], Northern [1]

Mature ola-miR-430d-3p

• Accession: MIMAT0013807
• Description: Oryzias latipes ola-miR-430d-3p mature miRNA
• Sequence: 51 - UAAGUGCUUCUCUUUGGGGUUG - 72
• Evidence: experimental ; in-situ [1], Northern [1]

References

1. PubMed ID: 19770025
   Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development
   "Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K"
   "Gene (2010) 449:41-49