Stem-loop ola-mir-430d-2

Accession

MI0013016

Description

Oryzias latipes ola-mir-430d-2 precursor miRNA

Literature search

3 open access papers mention ola-mir-430d-2
(12 sentences)

Sequence

3498 reads, 375.0 reads per million, 40 experiments

gaAUCGCUUCGAGGCCACCUCAAACAGagacacugaugguuuugauuuccUAAGUGCUUCUCUUUGGGGUUGucucaauguugguuu
(((((((...(((((.((((((((.((((.((((...((.........))..)))).)))).)))))))).)))))...).))))))

Structure

      - UUC     C        C    a    gau  uuu 
gaAUCG C   GAGGC ACCUCAAA AGag cacu   gg   u
|||||| |   ||||| |||||||| |||| ||||   ||   g
uuuggu g   cucuG UGGGGUUU UCUU GUGA   cc   a
      u uaa     U        C    C    -AU  uuu 

Annotation confidence Low

Genome context

4: 2064788-2064874 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from ola-mir-430d-2

Mature ola-miR-430d-2-5p

• Accession: MIMAT0057063
• Description: Oryzias latipes ola-miR-430d-2-5p mature miRNA
• Sequence: 3 - AUCGCUUCGAGGCCACCUCAAACAG - 27
• Evidence: experimental ; in-situ [1], Northern [1]

Mature ola-miR-430d-3p

• Accession: MIMAT0013807
• Description: Oryzias latipes ola-miR-430d-3p mature miRNA
• Sequence: 51 - UAAGUGCUUCUCUUUGGGGUUG - 72
• Evidence: experimental ; in-situ [1], Northern [1]

References

1. PubMed ID: 19770025
   Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development
   "Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K"
   "Gene (2010) 449:41-49