Stem-loop ola-mir-430c-5

Accession

MI0013019

Description

Oryzias latipes ola-mir-430c-5 precursor miRNA

Literature search

3 open access papers mention ola-mir-430c-5
(11 sentences)

Sequence

36765 reads, 4498.0 reads per million, 46 experiments

gucggacauucagaugaccuUAACAUAGGCACUGACUUGAAUUUCUUuGCAGUAAGUGCUACAUGUUGGGGUAGucuuggugucuagu
...(((((((.((((.((((((((((.((((((.(((..((.....))..))).))))))..)))))))))).)))).)))))))...

Structure

guc       c    g          -A      G   UG  U 
   ggacauu agau accuUAACAU  GGCACU ACU  AA U
   ||||||| |||| ||||||||||  |||||| |||  || U
   ucugugg ucuG UGGGGUUGUA  UCGUGA UGA  uU C
uga       u    A          CA      A   CG  U 

Annotation confidence Low

Genome context

4: 2068709-2068796 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from ola-mir-430c-5

Mature ola-miR-430c-5p

• Accession: MIMAT0057056
• Description: Oryzias latipes ola-miR-430c-5p mature miRNA
• Sequence: 21 - UAACAUAGGCACUGACUUGAAUUUCUU - 47
• Evidence: experimental ; in-situ [1], Northern [1]

Mature ola-miR-430c-3p

• Accession: MIMAT0013805
• Description: Oryzias latipes ola-miR-430c-3p mature miRNA
• Sequence: 49 - GCAGUAAGUGCUACAUGUUGGGGUAG - 74
• Evidence: experimental ; in-situ [1], Northern [1]

References

1. PubMed ID: 19770025
   Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development
   "Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K"
   "Gene (2010) 449:41-49