Stem-loop osa-MIR2871a

Accession

MI0013035

Description

Oryza sativa osa-MIR2871a precursor miRNA

Literature search

3 open access papers mention osa-MIR2871a
(4 sentences)

Sequence

111511 reads, 560.0 reads per million, 142 experiments

cauggUGACCGUAGAAACUAGCAUAGAaaaaaguagauaucucaagugacuuuguucauuuacguugggauagacaaguaacuaccuuuucUAUUUUAGUUUCUAUGGUCACUuugguggc
((.((((((((((((((((((.((((((((..((((.((((((((((((..........)))).)))))))).........)))).)))))))).)))))))))))))))))).)).....

Structure

-----  u                  C        aa    --------a        -    cuuu 
     ca ggUGACCGUAGAAACUAG AUAGAaaa  guag         uaucucaa guga    g
     || |||||||||||||||||| ||||||||  ||||         |||||||| ||||     
     gu UCACUGGUAUCUUUGAUU UAUcuuuu  cauc         auaggguu cauu    u
cggug  u                  U        -c    aaugaacag        g    uacu 

Annotation confidence High

Genome context

5: 3877013-3877133 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR2871a

Mature osa-miR2871a-5p

• Accession: MIMAT0020948
• Description: Oryza sativa osa-miR2871a-5p mature miRNA
• Sequence: 6 - UGACCGUAGAAACUAGCAUAGA - 27
• Evidence: experimental ; Illumina [2-4]

Mature osa-miR2871a-3p

• Accession: MIMAT0013820
• Description: Oryza sativa osa-miR2871a-3p mature miRNA
• Sequence: 92 - UAUUUUAGUUUCUAUGGUCACU - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


3. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


4. PubMed ID: 21791435
   Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
   "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
   "J Exp Bot (2011) 62:4943-4954