Stem-loop osa-MIR2871b

Accession

MI0013036

Description

Oryza sativa osa-MIR2871b precursor miRNA

Literature search

2 open access papers mention osa-MIR2871b
(4 sentences)

Sequence

20 reads, 15 reads per million, 2 experiments

auggcugcccacCAUGGUGACCGUAGAAACUAACAUagaaaaagagguagauaucucaagugacuuuguucauuuacguuggaauagacaaguaacuaccuuuucUAUUUUAGUUUCUAUGGUCACuaugguggcagccau
(((((((((.(((((((((((((((((((((((.((((((...(((((((.(((...........(((((.((((......)))).)))))))).))))))))))))).))))))))))))))))))))))))))))))))

Structure

         c                       C      aaa       a   cucaagugacu     c    ac 
auggcugcc acCAUGGUGACCGUAGAAACUAA AUagaa   gagguag uau           uuguu auuu  g
||||||||| ||||||||||||||||||||||| ||||||   ||||||| |||           ||||| ||||   
uaccgacgg ugguauCACUGGUAUCUUUGAUU UAUcuu   uuccauc aug           aacag uaag  u
         -                       U      ---       a   -----------     a    gu 

Annotation confidence Not enough data

Genome context

Chr4: 8340799-8340939 [+]

Mature osa-miR2871b-3p

• Accession: MIMAT0013821
• Description: Oryza sativa osa-miR2871b-3p mature miRNA
• Sequence: 106 - UAUUUUAGUUUCUAUGGUCAC - 126
• Evidence: experimental ; Illumina [1-3]

Mature osa-miR2871b-5p

• Accession: MIMAT0037363
• Description: Oryza sativa osa-miR2871b-5p mature miRNA
• Sequence: 13 - CAUGGUGACCGUAGAAACUAACAU - 36
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207


3. PubMed ID: 26083154
   MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
   "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
   "RNA Biol (2015) 12:847-863