Stem-loop osa-MIR2876

Accession

MI0013041

Description

Oryza sativa osa-MIR2876 precursor miRNA

Literature search

3 open access papers mention osa-MIR2876
(8 sentences)

Sequence

uuuuugaggaAAUUGCUGGCAGCACUGUUUAuauagaaauuucuguaaaauaauugcuccugagcuuguguuugucauaaauguuaguuguuacuguagauguuucuuuccuuaaaaguuucccuaaacauucuugcuuguuuacaggaaUUCCUAUAUGAACACUGUUGCcagcaauuug
.........(((((((((((((((.(((((((((((.((((((((((((......(((....)))(((((.....)))))....((((....))))..(((((((((((.....)))).......)))))))........)))))))))))).))))))))))).))))))))))))))).

Structure

uuuuugagg               C           a            auaauugcuccugagcuuguguuugucauaaauguuaguuguuacugua       -------    c 
         aAAUUGCUGGCAGCA UGUUUAuauag aauuucuguaaa                                                 gauguuu       cuuu c
         ||||||||||||||| ||||||||||| ||||||||||||                                                 |||||||       |||| u
         uuuaacgacCGUUGU ACAAGUAUAUC UUaaggacauuu                                                 uuacaaa       gaaa u
--------g               C           C            -----------------------------------------guucguuc       ucccuuu    a 

Annotation confidence Not enough data

Genome context

Chr6: 17008975-17009155 [-]

Mature osa-miR2876-3p

• Accession: MIMAT0013826
• Description: Oryza sativa osa-miR2876-3p mature miRNA
• Sequence: 151 - UUCCUAUAUGAACACUGUUGC - 171
• Evidence: experimental ; Illumina [1]

Mature osa-miR2876-5p

• Accession: MIMAT0020949
• Description: Oryza sativa osa-miR2876-5p mature miRNA
• Sequence: 11 - AAUUGCUGGCAGCACUGUUUA - 31
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53