Stem-loop ssc-let-7e

Accession

MI0013086

Description

Sus scrofa ssc-let-7e precursor miRNA

Literature search

40 open access papers mention ssc-let-7e
(144 sentences)

Sequence

693 reads, 219 reads per million, 13 experiments

gccccgggcUGAGGUAGGAGGUUGUAUAGUUgaggaggacacccacggagaucacuauacggccuccuagcuuuccccag
.....(((..(((.((((((((((((((((.((...(........).....)))))))))))))))))).)))..)))..

Structure

gcccc   cU   G                U  --gga gac 
     ggg  GAG UAGGAGGUUGUAUAGU ga     g   a
     |||  ||| |||||||||||||||| ||     |    
     ccc  uuc auccuccggcauauca cu     c   c
---ga   cu   g                -  agagg acc 

Annotation confidence Not enough data

Genome context

chr6: 51858376-51858455 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-let-7e

Mature ssc-let-7e

• Accession: MIMAT0013866
• Description: Sus scrofa ssc-let-7e mature miRNA
• Sequence: 10 - UGAGGUAGGAGGUUGUAUAGUU - 31
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100